Pan Lab
Publication
2024
- Yasith Indigahawela Gamage , Jianjun Pan*. Nanoscale Perturbations of Lipid Bilayers
Induced by Magainin 2: Insights from AFM Imaging and Force Spectroscopy. Chemistry
and Physics of Lipids 2024, 263: 105421
- Yasith Indigahawela Gamage, Yasinthara Wadumesthri, Humberto Rodríguez Gutiérrez,
Dmitri V. Voronine, Jianjun Pan*. The impact of transmembrane peptides on lipid bilayer
structure and mechanics: A study of the transmembrane domain of the influenza A virus
M2 protein. BBA-Biomembranes 2024, 1866: 184373
- Chinta M. Aryal, Jianjun Pan*. Probing the interactions of the HIV-1 matrix protein-derived
polybasic region with lipid bilayers: insights from AFM imaging and force spectroscopy.
European Biophysics Journal 2024, 53: 57–67.
- Kanchana Karunarathne, Teresa R. Kee, Hanna Jeon, Sara Cazzaro, Yasith I. Gamage, Jianjun Pan, Jung-A. A. Woo, David E. Kang*, Martin Muschol*. Crystal Violet Selectively Detects Aβ Oligomers but Not Fibrils In Vitro and in Alzheimer’s Disease Brain Tissue. Biomolecules 2024, 14(6), 615
2023
2022
2021
2020
- Olapeju Bolarinwa, Chunpu Li, Nawal Khadka, Qi Li, Yan Wang, Jianjun Pan*, Jianfeng
Cai*. gamma-AApeptides-Based Small Molecule Ligands That Disaggregate Human Islet
Amyloid Polypeptide. Scientific Reports 2020, 10: 95
- Milka Doktorova, Norbert Kucěrka, Jacob J. Kinnun, Jianjun Pan, Drew Marquardt, Haden
L. Scott, Richard M. Venable, Richard W. Pastor, Stephen R. Wassall, John Katsaras*,
Frederick A. Heberle*. Molecular Structure of Sphingomyelin in Fluid Phase Bilayers
Determined by the Joint Analysis of Small-Angle Neutron and X‐ray Scattering Data.
The Journal of Physical Chemistry B 2020, 124, 25: 5186–5200
- Drew Marquardt*, Frederick A. Heberle, Jianjun Pan, Xiaolin Cheng, Georg Pabst, Thad A. Harroun, Norbert Kučerka, John Katsaras*. The structures of polyunsaturated lipid bilayers by joint refinement of neutron and X-ray scattering data. Chemistry and Physics of Lipids 2020, 229: 104892
2019
2018
- Nawal K. Khadka, Chinta M. Aryal, Jianjun Pan*. Lipopolysaccharide-Dependent Membrane
Permeation and Lipid Clustering Caused by the Cyclic Lipopeptide Colistin. ACS Omega
2018, 3: 17828-17834. PMCID: PMC6312645
- Jianjun Pan*, Annalisa Dalzini, Nawal K. Khadka, Chinta M. Aryal, Likai Song*. Lipid Extraction by alpha-Synuclein Generates Semi-transmembrane Defects and Lipoprotein Nanoparticles. ACS Omega 2018, 3: 9586-9597. PMCID: PMC6120733
2017
- Jianjun Pan*, Prasana K. Sahoo, Annalisa Dalzini, Zahra Hayati, Chinta M. Aryal, Peng
Teng, Jianfeng Cai, Humberto Rodriguez Gutierrez, and Likai Song*. Membrane Disruption
Mechanism of a Prion Peptide (106-126) Investigated by Atomic Force Microscopy, Raman
and Electron Paramagnetic Resonance Spectroscopy. The Journal of Physical Chemistry
B 2017, 121: 5058-5071. PMCID: PMC5770145
- Nawal K. Khadka, Peng Teng, Jianfeng Cai, and Jianjun Pan*. Modulation of Lipid Membrane Structural and Mechanical Properties by a Peptidomimetic Derived from Reduced Amide Scaffold. Biochimica et Biophysica Acta - Biomembranes 2017, 1859: 734-744. PMCID: PMC5365377
- Alekhya Nimmagadda, Xuan Liu, Peng Teng, Ma Su, Yaqiong Li, Qiao Qiao, Nawal K Khadka, Xiaoting Sun, Jianjun Pan, Hai Xu*, Qi Li*, and Jianfeng Cai*. Polycarbonates with Potent and Selective Antimicrobial Activity toward Gram-Positive Bacteria. Biomacromolecules 2017, 18: 87-95. PMCID: PMC4779675
2016
- Chian Sing Ho, Nawal K. Khadka, Fengyu She, Jianfeng Cai, and Jianjun Pan*. Influenza
M2 Transmembrane Domain Senses Membrane Heterogeneity and Enhances Membrane Curvature.
Langmuir 2016, 32: 6730-6738. PMCID: PMC5131574
- Jianjun Pan*, Nawal K. Khadka. Kinetic Defects Induced by Melittin in Model Lipid
Membranes: A Solution Atomic Force Microscopy Study. The Journal of Physical Chemistry
B 2016, 120: 4625-4634. PMCID: PMC5123733.
- Chian Sing Ho, Nawal K. Khadka, Fengyu She, Jianfeng Cai, and Jianjun Pan*. Polyglutamine
Aggregates Impair Lipid Membrane Integrity and Enhance Lipid Membrane Rigidity. Biochimica
et Biophysica Acta - Biomembranes 2016, 1858: 661-670. PMCID: PMC4779675.
- Chian Sing Ho, Nawal K. Khadka, and Jianjun Pan*. Sub-Ten-Nanometer Heterogeneity of Solid Supported Lipid Membranes Determined by Solution Atomic Force Microscopy. Biochimica et Biophysica Acta - Biomembranes 2016, 1858: 181-188.
- Javier Alonso, Hafsa Khurshid, Jagannath Devkota, Zohreh Nemati, Nawal K. Khadka, Hariharan Srikanth, Jianjun Pan*, and Manh-Huong Phan*. Superparamagnetic Nanoparticles Encapsulated in Lipid Vesicles for Advanced Magnetic Hyperthermia and Biodetection. Journal of Applied Physics 2016, 119: 083904.
2015
- Nawal K. Khadka,Chian Sing Ho, and Jianjun Pan*. Macroscopic and Nanoscopic Heterogeneous
Structures in a Three-Component Lipid Bilayer Mixtures Determined by Atomic Force
Microscopy. Langmuir 2015, 31: 12417-12425.
- Nawal K. Khadka, Xiaolin Cheng, Chian Sing Ho, John Katsaras, and Jianjun Pan*. Interactions of the Anticancer Drug Tamoxifen with Lipid Membranes. Biophysical Journal 2015, 108: 2492-2501
- Norbert Kučerka*, Frederick A. Heberle, Jianjun Pan, and John Katsaras*. Structural
Significance of Lipid Diversity as Studied by Small Angle Neutron and X-ray Scattering.
Membranes 2015, 5: 454-472.
- Evan Lafalce*, Xiaomei Jiang, Jianjun Pan, Christi Whittington, Randy Larsen, Logan
Sanow, and Cheng Zhang. Hybrid-State Emission in a Polythienylenevinylene Derivative
with an Electron Deficient Moiety. The Journal of Chemical Physics 2015, 142: 164702
- Norbert Kučerka*, Brad van Oosten, Jianjun Pan, Frederick A. Heberle,Thad A. Harroun,
and John Katsaras*. Molecular Structures of Fluid Phosphatidylethanolamine Bilayers
Obtained from Simulation-to-Experiment Comparisons and Experimental Scattering Density
Profiles. The Journal of Physical Chemistry B 2015, 119: 1947-1956.
- Joseph C. Fogarty, Mihir Arjunwadkar, Sagar A. Pandit*, and Jianjun Pan. Atomically
Detailed Lipid Bilayer Models for Interpretation of Scattering Data. Biochimica et
Biophysica Acta - Biomembranes 2015, 1848: 662-672
- Jianjun Pan*, Xiaolin Cheng, Melissa Sharp, Chian-Sing Ho, Nawal Khadka, John Katsaras*. Structural and Mechanical Properties of Cardiolipin Lipid Bilayers Determined Using Neutron Spin Echo, Small Angle Neutron and X-ray Scattering, and Molecular Dynamics Simulations. Soft Matter 2015, 11:130-138.
2014
- Jianjun Pan*, Drew Marquardt, Frederick Heberle, Norbert Kučerka, John Katsaras*.
Revisiting the Bilayer Structures of Fluid Phase Phosphatidylglycerol Lipids: Accounting
for Exchangeable Hydrogens. Biochimica et Biophysica Acta - Biomembranes 2014, 1838:
2966-2969
- Jianjun Pan*, Xiaolin Cheng, Luca Monticelli, Frederick Heberle, Norbert Kučerka,
D. Peter Tieleman, John Katsaras*. The Molecular Structure of a Phosphatidylserine
Bilayer Determined by Scattering and Molecular Dynamics Simulations. Soft Matter 2014,
10: 3716-3725.
- Jianjun Pan*, Norbert Kučerka, Mu-Ping Nieh, Frederick Heberle, Paul Drazba, and John
Katsaras*. Lipid Diversity and Its Implication on Membrane Organization. Chapter 7
in Liposomes, Lipid Bilayers and Model Membranes From Basic Research to Application.
ISBN: 978-1466507098, CRC Press 2014, p.125-142.
- Peter Heftberger, Benjamin Kollmitzer, Frederick Heberle, Jianjun Pan, Michael Rappolt, Heinz Amenitsch, Norbert Kučerka, John Katsaras, and Georg Pabst*. Global Small-Angle X-ray Scattering Data Analysis for Multilamellar Vesicles: the Evolution of the Scattering Density Profile Model. Journal of Applied Crystallography 2014, 47: 173-180.
2013
- Jianjun Pan*, Frederick Heberle, Robin Petruzielo, and John Katsaras*. Using Small-Angle
Neutron Scattering to Detect Nanoscopic Lipid Domains. Chemistry and Physics of Lipids 2013,
170: 19-32.
- Frederick Heberle*, Robin Petruzielo, Jianjun Pan, Paul Drazba, Norbert Kučerka, Robert
Standaert, Gerald Feigenson, and John Katsaras*. Bilayer Thickness Mismatch Controls
Domain Size in Model Membranes. Journal of the American Chemical Society 2013, 135:
6853-6859.
- Jianjun Pan*, Frederick Heberle, and John Katsaras*. Small-Angle Neutron Scattering and the Study of Nanoscopic Lipid Membranes. Chapter 3 in Recent Progress in Neutron Scattering Research. ISBN:978-1629480992, Nova Science Pub Inc. 2013, p.77-103.
2012
- Jianjun Pan, Qiang Chen, Dan Willenbring, Ken Yoshida, Tommy Tillman, Ossama B Kashlan, Aina Choen, Xiang-Peng Kong, Yan Xu, and Pei Tang*. Structure of the Pentameric Ligand-Gated Ion Channel ELIC Cocrystallized with Its Competitive Antagonist Acetylcholine. Nature Communications 2012, 3: 714-721.
- Jianjun Pan*, Frederick Heberle, Stephanie Tristram-Nagle, Michelle Szymanski, Mary Koepfinger, John Katsaras, and Norbert Kučerka. Molecular Structures of Fluid Phase Phosphatidylglycerol Bilayers as Determined by Small Angle Neutron and X-ray Scattering. Biochimica et Biophysica Acta 2012, 1818: 2135-2148.
- Jianjun Pan, Qiang Chen, Dan Willenbring, David Mowrey, Xiang-Peng Kong, Aina Cohen, Christopher Divito, Yan Xu, and Pei Tang*. Structure of the Pentameric Ligand-Gated Ion Channel GLIC Bound with Anesthetic Ketamine. Structure 2012, 20: 1463-1469.
- Jianjun Pan*, Xiaolin Cheng, Frederick Heberle, Barmak Mostofian, Norbert Kučerka, Paul Drazba, and John Katsaras*. Interactions between Ether Phospholipids and Cholesterol as Determined by Scattering and Molecular Dynamics Simulations. Journal of Physical Chemistry B 2012, 116: 14829-14838.
- Jianjun Pan*, Frederick Heberle, Justin Carmichael, John Ankner, and John Katsaras*. Time-of-Flight Bragg Scattering from Aligned Stacks of Lipid Bilayers at the SNS' Liquids Reflectometer. Journal of Applied Crystallography 2012, 45: 1219-1227.
- Frederick Heberle*, Jianjun Pan, Robert Standaert, Paul Drazba, Norbert Kučerka, and John Katsaras*. Model-Based Approaches for the Determination of Lipid Bilayer Structure from Small-Angle Neutron and X-ray Scattering Data. European Biophysics Journal 2012, 41: 875-890.
2009
- Jianjun Pan, Stephanie Tristram-Nagle, and John F. Nagle*. Effect of Cholesterol on Structural and Mechanical Properties of Membranes Depends on Lipid Chain Saturation. Physical Review E 2009, 80: 021931.
- Jianjun Pan, Peter D. Tieleman, John F. Nagle, Norbert Kučerka, and Stephanie Tristram-Nagle*. Alamethicin in Lipid Bilayers: Combined Use of X-ray Scattering and MD Simulations. Biochimica et Biophysica Acta 2009, 1788: 1387-1397.
- Jianjun Pan, Stephanie Tristram-Nagle, and John F. Nagle*. Alamethicin Aggregation in Lipid Membranes. Journal of Membrane Biology 2009, 231: 11-27.
- Deren Guler, Dipon Golsh, Jianjun Pan, John Mathai, Mark Zeidel, John F. Nagle, and Stephanie Tristram-Nagle*. Effects of Ether vs. Ester Linkage on Lipid Bilayer Structure and Water Permeability. Chemistry and Physics of Lipids 2009, 160: 33-44.
2008
- Jianjun Pan, Thalia Mills, Stephanie Tristram-Nagle, and John F. Nagle*. Cholesterol Perturbs Lipid Bilayers Nonuniversally. Physical Review Letters 2008, 100: 198103.
- Jianjun Pan, Stephanie Tristram-Nagle, Norbert Kučerka, and John F. Nagle*. Temperature Dependence of Structure, Bending Rigidity and Bilayer Interactions of Dioleoylphosphatidylcholine Bilayers. Biophysical Journal 2008, 94: 117-124.
- Alexander Greenwood, Jianjun Pan, Thalia Mills, John F. Nagle, Richard Epand, and Stephanie Tristram-Nagle*. CRAC Motif Peptide of the HIV-1 gp41 Protein Thins SOPC Membranes and Interacts with Cholesterol. Biochimica et Biophysica Acta 2008, 1778: 1120-1130.
- Norbert Kučerka, Jason Perlmutter, Jianjun Pan, Stephanie Tristram-Nagle, John Katsaras, and Jonathan Sachs*. The Effect of Cholesterol on Short- and Long-Chain Monounsaturated Lipid Bilayers as Determined by Molecular Dynamics Simulations and X-ray Scattering. Biophysical Journal 2008, 95: 2792-2805.