DTMB2022
Program and Abstracts
All talks ecxept the join talks with DLT-2022 will be in ISA 1061 (see the google map).
See the abstracts in the conference brochure.
| 1:00pm-1:50pm | Registration | |
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1:50pm-2:00pm |
Opening | |
| 2:00pm-3:00pm Room: ISA 1051 |
Jarkko Kari |
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| 3:00pm-3:30pm | Coffee break | |
| 3:30pm-4:30pm | De Witt Sumners Knots in biology and fluid dynamics |
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| 4:30pm-5:00pm | Chad Giusti Iterated integrals for time-varying persistence diagrams |
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| 9:00am-9:30am | Breakfast | |
| 9:30am-10:30am | Mariel Vazquez Topological considerations in genome biology |
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| 10:30am-11:00am | Coffee break | |
| 11:00am-11:30am | Rob Scharein Knot shadows in the field |
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| 11:30am-12:30pm | Sarah Olson Modeling cell motility: from agent based models to continuous approximations |
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| 12:30pm-2:00pm | Lunch break | |
| 2:00pm-2:30pm | Radmila Sazdanovic Data, relations and their shape |
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| 2:30pm-3:00pm | Pawel Dlotko Shapes and their meaning in biology |
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| 3:00pm-3:30pm | Coffee break | |
| 3:30pm-4:00pm | Noureen Khan Encoding virtual tangles for topological conformation of DNA bounds |
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| 4:00pm-4:30pm |
Asja Radja |
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| 4:30pm-5:00pm | Giuliana Indelicato A jigsaw puzzle for Thermus virus P23-77 |
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| 5:00pm-7:00pm | Reception / Poster session | |
| 9:00am-9:30am | Breakfast | |
| 9:30am-10:30am Room: ISA 1051 |
Paola Bonizzoni How can formal languages help pangenomics? |
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| 10:30am-11:00am | Emanuela Merelli The topology of RNA folding |
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| 11:00am-11:30am | Coffee break | |
| 11:30am-12:00pm | Abdulmelik Mohammed Genome rearrangement dynamics in the ciliate oxytricha trifallax |
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| 12:00pm-12:30pm |
Ian McQuillan |
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| 12:30pm-1:00pm | Stella Hartono Understanding the relationship between co-transcriptional R-loops and DNA topology |
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| 1:00pm-2:00pm | Lunch break | |
| 2:00pm-3:00pm | Peter Bubenik Topological data analysis for biological images and video |
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| 3:00pm-3:30pm |
Coffee break |
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| 3:30pm-4:00pm | Tom Needham Hypergraph co-optimal transport |
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| 4:00pm-4:30pm | Daniela Genova Equivalence and minimization of reaction systems |
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| 10:00am-10:30am Room: ISA 1051 |
Announcement of awards | |
| 10:30am-11:00am | Yuanan Diao The ropelengths of alternating knots |
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| 11:00am-11:30am | Coffee break | |
| 11:30am-12:30pm | Vladimir Itzkov The topology of Boltzmann machines: learning and dimensionality |
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| 12:30pm-2:00pm | Lunch break | |
| 2:00pm-2:30pm | Francesca Storici Models for DNA-RNA interactions in double-strand break repair |
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| 2:30pm-3:00pm | Michela Quadrini RNA abstractions for structural comparison and classification |
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| 3:00pm-3:30pm | Coffee break | |
| 3:30pm-4:30pm | Christine Heitsch Can geometric combinatorics improve RNA folding predictions? |
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| 4:30pm-5:00pm | Svetlana Poznanovic Improving RNA branching predictions: advances and limitations |
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| 7:00pm-10:00pm | Conference dinner | |
| 9:00am-9:30am | Breakfast | |
| 9:30am-10:30am | Ion Petre Network controllability: algorithmics and applications in medicine |
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| 10:30am-11:00am | Coffee break | |
| 11:00am-12:00pm | Lila Kari Mathematical representations of DNA sequences and the biodiversity grand challenge |
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| 12:00am-12:30pm | Matt Macauley Artifacts of synchrony in Boolean models of tryptophan |
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